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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22116076_22116694_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22116076 - 22116694
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGTATTAATT
Flanking Amino Acid:
KSLWSGFPPTLIMALPTTVI
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
68.3
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.1
0.9
0.7
90.1
24.5
Minor 5ss
42.5
-0.8
2.8
59.1
45.4
Minor BPS
66.3
0.59
1.7
84.39
36.6

Associated Gene:

Gene:
SLC25A40
Ensembl Gene ID:
ENSAPLG00000029327
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026775
22107474 - 22126059
18586