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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22116763_22123087_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22116763 - 22123087
Intron Length:
6325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GTTATATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTGCAGCTAATT
Flanking Amino Acid:
RKNGHFNGTLDAFVKIIKVE
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
77.3
0.61
0.9
74.5
40.2
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
43.7
-0.4
2.4
67.14
43.5

Associated Gene:

Gene:
SLC25A40
Ensembl Gene ID:
ENSAPLG00000029327
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026775
22107474 - 22126059
18586