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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22123196_22124074_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22123196 - 22124074
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
ACCATTTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CAATTATTAACT
Flanking Amino Acid:
CKPKAIHSPKESVLYTPVAL
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
64.3
0.32
0.9
63.3
37.5
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
63.1
0.49
1.6
75.02
41.3

Associated Gene:

Gene:
SLC25A40
Ensembl Gene ID:
ENSAPLG00000029327
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026775
22107474 - 22126059
18586