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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22124135_22125533_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22124135 - 22125533
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GGTTTCTAAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
56.2
0.06
1.7
60.21
42

Associated Gene:

Gene:
SLC25A40
Ensembl Gene ID:
ENSAPLG00000029327
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026775
22107474 - 22126059
18586