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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22127075_22129331_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22127075 - 22129331
Intron Length:
2257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTCTGTTTAAAT
Flanking Amino Acid:
KPGTARAARTPDGMQAKTEK
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.4
61.8
43.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85.6
0.8
0.9
84.2
30.7
Minor 5ss
34.9
-1.7
3.2
48.1
41.3
Minor BPS
62.6
0.47
1.9
80.63
41.5

Associated Gene:

Gene:
DBF4
Ensembl Gene ID:
ENSAPLG00000004426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004563
22126980 - 22143778
16799