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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22133947_22134710_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22133947 - 22134710
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TGTTGTAATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCTGTTGTAATA
Flanking Amino Acid:
DGNSFKTIDTVRMSRGKSLV
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
68.9
0.42
1
63
42.2
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
48.2
-0.1
2
61.33
40.4

Associated Gene:

Gene:
DBF4
Ensembl Gene ID:
ENSAPLG00000004426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004563
22126980 - 22143778
16799