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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22135625_22137063_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22135625 - 22137063
Intron Length:
1439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTCCAATA
Flanking Amino Acid:
KSTGSSLKDVAKQVTTQKSR
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.9
0.7
0.8
78.7
28.7
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
53.2
0.1
1.8
71.6
34.7

Associated Gene:

Gene:
DBF4
Ensembl Gene ID:
ENSAPLG00000004426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004563
22126980 - 22143778
16799