About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22137095_22137366_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22137095 - 22137366
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCTTCATT
Flanking Amino Acid:
AKQVTTQKSRSRLKNPFVKV
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.7
0.35
1
61.7
33.4
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
64.3
0.53
1.8
83.96
37.3

Associated Gene:

Gene:
DBF4
Ensembl Gene ID:
ENSAPLG00000004426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004563
22126980 - 22143778
16799