About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22139884_22140986_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22139884 - 22140986
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TCCTTAATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTTTCCTTAATT
Flanking Amino Acid:
CGKKYEDLQTHLESEQHRNF
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
69.2
36.7
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
79
0.65
0.9
70.2
39.1
Minor 5ss
44
-0.6
2.6
60.3
44.3
Minor BPS
95.9
1.52
0.5
104
16.3

Associated Gene:

Gene:
DBF4
Ensembl Gene ID:
ENSAPLG00000004426
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004563
22126980 - 22143778
16799