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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22150291_22168231_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22150291 - 22168231
Intron Length:
17941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGTAGCTGAATT
Flanking Amino Acid:
WRSAPCPPPQSTHIARASFQ
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.2
0.79
0.8
80.1
31.5
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
53.7
0.19
1.9
74.63
42

Associated Gene:

Gene:
ADAM22
Ensembl Gene ID:
ENSAPLG00000004784
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030216
22148959 - 22246824
97866