About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22168309_22219133_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22168309 - 22219133
Intron Length:
50825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTTATTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
SSFILDVTLNHDLLSSEYLE
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.2
0.81
0.8
80.8
31.1
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
ADAM22
Ensembl Gene ID:
ENSAPLG00000004784
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005011
22150233 - 22280129
129897
ENSAPLT00000041795
22150233 - 22291227
140995
ENSAPLT00000041528
22150233 - 22291248
141016
ENSAPLT00000035994
22150233 - 22291248
141016
ENSAPLT00000030216
22148959 - 22246824
97866
ENSAPLT00000042553
22150233 - 22291248
141016