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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22242159_22244464_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22242159 - 22244464
Intron Length:
2306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GTGTCATAGACT
Flanking Amino Acid:
KPRHKRSRRQVRQIPRKVDE
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
75.7
0.58
0.8
70.2
30
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
51.6
0.13
2
73.11
43.7

Associated Gene:

Gene:
ADAM22
Ensembl Gene ID:
ENSAPLG00000004784
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026567
22233090 - 22289301
56212
ENSAPLT00000041795
22150233 - 22291227
140995
ENSAPLT00000005011
22150233 - 22280129
129897
ENSAPLT00000041528
22150233 - 22291248
141016
ENSAPLT00000035994
22150233 - 22291248
141016
ENSAPLT00000030216
22148959 - 22246824
97866
ENSAPLT00000042553
22150233 - 22291248
141016