About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22245581_22246584_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22245581 - 22246584
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTACTGTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTGACATAATA
Flanking Amino Acid:
AKSVVNMADLIYKEQLNTRI
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
80.8
31.6
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
63
0.29
1
55.5
44.4
Minor 5ss
42.1
-0.9
2.8
56.5
35.6
Minor BPS
56.1
0.19
1.9
73.31
38.6

Associated Gene:

Gene:
ADAM22
Ensembl Gene ID:
ENSAPLG00000004784
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035994
22150233 - 22291248
141016
ENSAPLT00000030216
22148959 - 22246824
97866
ENSAPLT00000042553
22150233 - 22291248
141016
ENSAPLT00000026567
22233090 - 22289301
56212
ENSAPLT00000041795
22150233 - 22291227
140995
ENSAPLT00000005011
22150233 - 22280129
129897
ENSAPLT00000041528
22150233 - 22291248
141016