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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22277956_22280096_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22277956 - 22280096
Intron Length:
2141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
GTTCCTTCCATT
Flanking Amino Acid:
PPPNREPGSQVFKPMVQKRI
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.2
76.2
39.9
Major BPS
65
0.37
1.3
76.1
38
Major PPT
81
0.7
0.8
76.8
31.8
Minor 5ss
34.2
-1.8
2.9
44.7
43.1
Minor BPS
48.4
-0
1.9
70.3
41

Associated Gene:

Gene:
ADAM22
Ensembl Gene ID:
ENSAPLG00000004784
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005011
22150233 - 22280129
129897