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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22301015_22301166_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22301015 - 22301166
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTGTCTTCAATA
Flanking Amino Acid:
EELEKALTNMGFRLSPQAVT
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.1
0.45
1
67.4
38.3
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
60.8
0.34
1.5
66.87
40.5

Associated Gene:

Gene:
SRI
Ensembl Gene ID:
ENSAPLG00000005582
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005802
22299498 - 22306418
6921