About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22305835_22306367_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22305835 - 22306367
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
TTGATTTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTTGATT
Flanking Amino Acid:
APGGGFYQGGYGGAPGGPAF
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
45.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71
0.47
1.1
72
38.1
Minor 5ss
29.9
-2.3
3.2
29.1
43.5
Minor BPS
77.9
0.96
1
87.31
31.7

Associated Gene:

Gene:
SRI
Ensembl Gene ID:
ENSAPLG00000005582
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005802
22299498 - 22306418
6921