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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22330381_22331399_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22330381 - 22331399
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTAACCTCTACT
Flanking Amino Acid:
VNWREFRFVQSKLGYLTLIL
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.8
0.6
0.8
70
36.5
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
57
0.3
1.9
78.61
42.8

Associated Gene:

Gene:
STEAP4
Ensembl Gene ID:
ENSAPLG00000005915
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006126
22329945 - 22351743
21799