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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22331565_22332151_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22331565 - 22332151
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GTATCACTAATG
Flanking Amino Acid:
WRTEDGIISKALSNKTDPFN
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.2
1.16
0.6
97
9.5
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
92.3
0.95
0.6
91.5
19.8
Minor 5ss
46.1
-0.4
2.8
66.9
44.4
Minor BPS
49.3
-0.1
2
59.5
41.8

Associated Gene:

Gene:
STEAP4
Ensembl Gene ID:
ENSAPLG00000005915
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006126
22329945 - 22351743
21799