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Intron Name: Anas_platyrhynchos_platyrhynchos_2_22334978_22351587_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
22334978 - 22351587

Intron Length:
16610

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGAGTTTT

5'SS Class:
strong_major

3'SS Sequence:
TTTTTTTTAATAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TTTTTTTTAATA

Flanking Amino Acid:
RGERRRLSAQMNKNSSNIMA

Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
94.9
1.06
0.6
93
14.8

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
86.6
0.82
0.7
85.3
27.9

Minor 5ss
40.7
-1
3
57.8
46.8

Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
STEAP4

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

22331534 - 22351743
20210

22329945 - 22351743
21799