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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22461725_22468107_R

Intron Information:

Intron Rank:
152293
Intron Class:
major
Intron Phase:
Intron Coordinates:
22461725 - 22468107
Intron Length:
6383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAATATT
5'SS Class:
major
3'SS Sequence:
TTTCCTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TTTCCCATACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
82
30.4
Major BPS
66.4
0.41
1
61.3
37
Major PPT
75.4
0.57
1
74.9
33.7
Minor 5ss
35.7
-1.6
3.1
47.6
42.5
Minor BPS
53.5
0.19
2
80.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043250
22449472 - 22468339
18868