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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22572736_22572865_R

Intron Information:

Intron Rank:
145543
Intron Class:
major
Intron Phase:
Intron Coordinates:
22572736 - 22572865
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
GCTGATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTACGTACAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
70.2
0.5
1
72.1
33
Major PPT
75.2
0.57
1
65.1
45.3
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
42
-0.6
2
54.86
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025702
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046674
22572600 - 22574267
1668