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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_225937_230342_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
225937 - 230342
Intron Length:
4406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTGCA
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GTATTCTGGACT
Flanking Amino Acid:
GLNVERVFQDVAQKVVALRK
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
67.7
37.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
38.7
-1.3
3.1
47.4
43.3
Minor BPS
63
0.49
1.5
77.24
38.8

Associated Gene:

Gene:
AGAP3
Ensembl Gene ID:
ENSAPLG00000009810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020512
161522 - 246527
85006
ENSAPLT00000010208
161522 - 246527
85006
ENSAPLT00000007060
161522 - 267922
106401