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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22718400_22740590_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22718400 - 22740590
Intron Length:
22191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTCACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GCTTTTTTCACA
Flanking Amino Acid:
INSYDHAHKQRLKDLKQREF
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
45.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.5
0.78
0.8
80.9
30.1
Minor 5ss
40.8
-1
3.2
55.8
48.4
Minor BPS
57.5
0.23
1.7
66.82
40.3

Associated Gene:

Gene:
ZNF804B
Ensembl Gene ID:
ENSAPLG00000005972
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006176
22707291 - 22747836
40546