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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_22904033_23042092_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
22904033 - 23042092
Intron Length:
138060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATTTCAAAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
30.6
-2.2
2.9
38
41
Minor BPS
49.5
-0
2
63.81
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005986
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019211
22903111 - 23049132
146022