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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2302700_2304974_R

Intron Information:

Intron Rank:
133754
Intron Class:
major
Intron Phase:
Intron Coordinates:
2302700 - 2304974
Intron Length:
2275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TCACCTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.5
32.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
81.8
0.72
0.8
73.6
37
Minor 5ss
33.8
-1.8
3.4
45.5
45
Minor BPS
59.4
0.37
1.7
75.09
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019213
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021630
2302298 - 2307483
5186