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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23038949_23042092_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
23038949 - 23042092
Intron Length:
3144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CATTTCAAAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
38.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
25.2
-2.9
3.2
30
43.6
Minor BPS
49.5
-0
2
63.81
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005986
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006199
23038730 - 23049159
10430