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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23042198_23044459_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23042198 - 23044459
Intron Length:
2262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGTTT
5'SS Class:
major
3'SS Sequence:
CTGTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTCATTTTACA
Flanking Amino Acid:
RRNRGNLSNLNVDMQVTNPP
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.1
36.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84.3
0.77
0.8
76.5
37.6
Minor 5ss
42.9
-0.8
3.4
61.4
45.4
Minor BPS
51.2
0.03
1.8
65.66
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005986
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019211
22903111 - 23049132
146022
ENSAPLT00000006199
23038730 - 23049159
10430