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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2305118_2307360_R

Intron Information:

Intron Rank:
133755
Intron Class:
major
Intron Phase:
Intron Coordinates:
2305118 - 2307360
Intron Length:
2243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCATAA
U12 Branch Point Sequence:
CCATCCATAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.7
39.1
Major BPS
52.4
0.06
1.1
49.2
36.2
Major PPT
87.4
0.84
0.7
80.6
31.4
Minor 5ss
35.9
-1.6
3.3
47.3
48.1
Minor BPS
50.2
0
2
60.8
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019213
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021630
2302298 - 2307483
5186