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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23069285_23074025_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23069285 - 23074025
Intron Length:
4741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCAAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTTTTCAAAG
Flanking Amino Acid:
LNWREFSFIQSTLGYVALII
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.2
28.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.8
0.74
0.9
85.8
26
Minor 5ss
41.1
-1
2.7
51.5
45.7
Minor BPS
59.2
0.15
1.7
68.37
39.3

Associated Gene:

Gene:
STEAP2
Ensembl Gene ID:
ENSAPLG00000005995
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044133
23061005 - 23074540
13536
ENSAPLT00000006205
23061005 - 23074310
13306
Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355