About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23074174_23083272_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
23074174 - 23083272
Intron Length:
9099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGAAAAA
U12 Branch Point Sequence:
TTCTCCCTACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
27.6
Major BPS
45
-0.3
1.1
45.4
33.7
Major PPT
83.1
0.75
0.7
76.7
25.5
Minor 5ss
38.2
-1.3
3
48.6
47.1
Minor BPS
48.5
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355