About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23084087_23085478_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23084087 - 23085478
Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TTTCGTATTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTTTTCGTATTT
Flanking Amino Acid:
AIRLLGDSDSSNLEEKQLKV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.3
63.6
42.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
72.8
0.51
1.1
76.3
36.7
Minor 5ss
33.9
-1.8
3.2
44.7
43.5
Minor BPS
50.1
0.08
2.2
75.8
41.6

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355