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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23085545_23086580_F

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
23085545 - 23086580
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTTAAATTAAAAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCCTTAACT
Flanking Amino Acid:
KVVKRFENGLPLKDLAQIID
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
57.1
42.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
61
0.25
1.2
61.5
42.5
Minor 5ss
98.8
1.64
0.5
96
12.5
Minor BPS
95.5
1.51
0.6
102.8
20

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355