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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23086691_23088716_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23086691 - 23088716
Intron Length:
2026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATG
Flanking Amino Acid:
EPVCELIKLCGLPFQKKKLS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
64.8
0.33
1.3
65.7
36.6

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355