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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23088794_23090138_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23088794 - 23090138
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AACTTTGTAATT
Flanking Amino Acid:
VTVSKSIAQLGYLMRVPSSQ
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
79.3
28.9
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
71.5
0.48
1
68.8
37.3
Minor 5ss
31
-2.2
3.2
36.8
41.9
Minor BPS
49.4
0.04
1.9
66.17
39.5

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355