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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23090238_23093113_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23090238 - 23093113
Intron Length:
2876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
ATTCTATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TGCATTATAACT
Flanking Amino Acid:
KAELPRKLLSGYQPTSANYK
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
75.6
0.58
1
70.2
39.7
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
52.7
0.16
1.6
69.79
41.1

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355