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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23093264_23093387_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23093264 - 23093387
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTACA
5'SS Class:
major
3'SS Sequence:
TTCATGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGATTT
Flanking Amino Acid:
LKVLQHLSSSGVNCRHMLKA
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
74.5
35.2
Major BPS
100
1.24
0.5
100
0
Major PPT
77.4
0.62
0.9
73.8
40.4
Minor 5ss
32.5
-2
2.4
33.7
34.6
Minor BPS
56.5
0.28
2
82.31
38.9

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355