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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23096699_23096818_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23096699 - 23096818
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTTGTTGTAACA
Flanking Amino Acid:
LLIVLATYTEVKIPNPLLKG
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.1
0.72
0.8
76.9
31.7
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
55.9
0.18
2.1
73.92
38.7

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355