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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23096941_23097421_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23096941 - 23097421
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTCTTTTGAATC
Flanking Amino Acid:
ILSKDPRAVQLLSENDVMPA
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.7
0.62
0.9
70.7
39.8
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
57.2
0.21
1.4
62.98
37

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355