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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23097639_23098512_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23097639 - 23098512
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TATTTCTCCACA
Flanking Amino Acid:
LVFLEWCMGQDPFFGQGNSF
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.2
78
38.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.2
0.73
0.8
76.9
31.5
Minor 5ss
30.5
-2.2
2.5
34.7
40.9
Minor BPS
55.9
0.18
2
72.46
39.4

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355