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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23100600_23101696_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23100600 - 23101696
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTAGTGAA
5'SS Class:
major
3'SS Sequence:
GTTTCTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTGTTTCTATTT
Flanking Amino Acid:
RLLFNALDCLWSCVVGCYIG
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
71.5
33.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
73.1
0.52
1.1
76.6
36.5
Minor 5ss
28.5
-2.5
2.9
29.8
36.9
Minor BPS
49.2
0.02
1.9
71.43
40.6

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355