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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23103666_23105958_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23103666 - 23105958
Intron Length:
2293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
AATACTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
ATGCTGTTAACA
Flanking Amino Acid:
AKLYLLLCKLGFEDLPGLSA
Intron Amino Acid Position:
740

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
68.1
0.41
0.9
63.9
38.2
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
53.6
0.11
2.1
66.63
39.9

Associated Gene:

Gene:
CFAP69
Ensembl Gene ID:
ENSAPLG00000006061
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006292
23069120 - 23111474
42355