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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23115211_23115925_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23115211 - 23115925
Intron Length:
715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCACA
5'SS Class:
major
3'SS Sequence:
CGTAATCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTAAT
U12 Branch Point Sequence:
TCTTTCGTAATC
Flanking Amino Acid:
SSTYSHRTLEGSAFTNRF*
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
71.6
40.2
Major BPS
71.8
0.54
1.2
71.9
41
Major PPT
73.3
0.52
1
64.9
40.9
Minor 5ss
45.2
-0.5
2.6
58.9
45.3
Minor BPS
60.9
0.32
2
73.1
38.8

Associated Gene:

Gene:
FAM237B
Ensembl Gene ID:
ENSAPLG00000002079
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002076
23114282 - 23116327
2046