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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23122306_23125676_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23122306 - 23125676
Intron Length:
3371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACAAA
5'SS Class:
major
3'SS Sequence:
GTTTTCCTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TATTGCTGATGT
Flanking Amino Acid:
LPWQNRVSLQYGTFIDDLRL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
72.6
33.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79.5
0.66
0.8
77.9
30.9
Minor 5ss
32.6
-2
2.9
39
46.4
Minor BPS
45.7
-0.2
2.3
69.94
46.5

Associated Gene:

Gene:
GTPBP10
Ensembl Gene ID:
ENSAPLG00000006290
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041312
23121703 - 23137570
15868