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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23125318_23125676_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23125318 - 23125676
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
GTTTTCCTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TATTGCTGATGT
Flanking Amino Acid:
VRGSGAALRRYGTFIDDLRL
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.3
60.8
42.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
79.5
0.66
0.8
77.9
30.9
Minor 5ss
28
-2.5
2.9
25.3
36.2
Minor BPS
45.7
-0.2
2.3
69.94
46.5

Associated Gene:

Gene:
GTPBP10
Ensembl Gene ID:
ENSAPLG00000006290
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006539
23124838 - 23137991
13154