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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23126797_23129132_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23126797 - 23129132
Intron Length:
2336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TGTTTATTCACT
Flanking Amino Acid:
LKLIADVGLVGFPNAGKSSL
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
78.3
0.64
0.8
70
36.6
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
58.3
0.34
2
81.55
39.8

Associated Gene:

Gene:
GTPBP10
Ensembl Gene ID:
ENSAPLG00000006290
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041312
23121703 - 23137570
15868
ENSAPLT00000006539
23124838 - 23137991
13154