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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2316564_2358239_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
2316564 - 2358239
Intron Length:
41676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCATG
5'SS Class:
weak_major
3'SS Sequence:
GTGTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAGCAT
U12 Branch Point Sequence:
CCAGCCTGACAG
Flanking Amino Acid:
PRSAPAFLGERSLAIGHQYS
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.3
63.8
47.8
Major BPS
46.8
-0.2
1.4
53.7
41.6
Major PPT
84.7
0.78
0.9
76.9
42.1
Minor 5ss
47.5
-0.2
2.9
66.1
45
Minor BPS
40.7
-0.8
1.9
37.82
44.5

Associated Gene:

Gene:
WNT3A
Ensembl Gene ID:
ENSAPLG00000004673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037374
2309543 - 2394382
84840