About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2318133_2358239_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2318133 - 2358239
Intron Length:
40107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACAGCAT
U12 Branch Point Sequence:
CCAGCCTGACAG
Flanking Amino Acid:
MGSLAIGHQYS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
46.8
-0.2
1.4
53.7
41.6
Major PPT
84.7
0.78
0.9
76.9
42.1
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
40.7
-0.8
1.9
37.82
44.5

Associated Gene:

Gene:
WNT3A
Ensembl Gene ID:
ENSAPLG00000004673
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004806
2318128 - 2394382
76255