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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23213107_23219236_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23213107 - 23219236
Intron Length:
6130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCCTTTTATT
Flanking Amino Acid:
RTLSESFSRIALKKEDSSFD
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.9
33.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.2
0.7
1
82.5
32.7
Minor 5ss
25
-2.9
3.3
32.7
42.5
Minor BPS
67.9
0.65
1.6
85.32
34.8

Associated Gene:

Gene:
CDK14
Ensembl Gene ID:
ENSAPLG00000006499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046510
23212061 - 23536404
324344