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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23219269_23296056_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23219269 - 23296056
Intron Length:
76788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTAAAATCAATG
Flanking Amino Acid:
LKKEDSSFDEICVTKMSTRN
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.2
30.6
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
44.1
-0.5
2
52.15
41.8

Associated Gene:

Gene:
CDK14
Ensembl Gene ID:
ENSAPLG00000006499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046510
23212061 - 23536404
324344