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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_23296303_23307579_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23296303 - 23307579
Intron Length:
11277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACATTCTGAAAG
Flanking Amino Acid:
KVRRHSSPSSPTSPKFGKAD
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
49.8
-0.1
1.6
52.65
41.6

Associated Gene:

Gene:
CDK14
Ensembl Gene ID:
ENSAPLG00000006499
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046510
23212061 - 23536404
324344
ENSAPLT00000038682
23279420 - 23536404
256985
ENSAPLT00000017679
23286058 - 23536404
250347
ENSAPLT00000006746
23222643 - 23536404
313762